Thèrése Bocklage, MD

Publications & Other Scholarly Work:

1            Fan T, Higashi RM, Song H, Daneshmandi S, Mahan AL, Purdom MS, Bocklage TJ,Pittman TA, He D, Wang C, Lane AN. Innate immune activation by checkpoint inhibition in human patient-derived lung cancer tissues. Elife. 2021 Aug 18;10:e69578. doi: 10.7554/eLife.69578. Epub ahead of print. PMID: 34406120

2            Jassim TK, Sheng T, Zhang S, Wei S, Arnold SM, Kejner AE, Bocklage TJ, Dueber JC. Novel fusion KTN1-PRKD1 in cribriform adenocarcinoma of salivary glands located in the parotid gland: case report including cytologic findings. Hum Pathol Case Reports. 2021 https://doi.org/10.1016/j.ehpc.2021.200496.

3            Brainson CF, Huang B, Chen Q, McLouth LE, He C, Hao Z, Arnold SM,   Zinner RG, Mullett TW, Bocklage TJ, Orren DK, Villano JL, Durbin EB. Description of a Lung Cancer Hotspot: Disparities in Lung Cancer Histology, Incidence, and  Survival in Kentucky and Appalachian Kentucky. Clin Lung Cancer. 2021 Mar 26:S1525-7304(21)00061-9. doi: 10.1016/j.cllc.2021.03.007. Epub ahead of print. PMID: 33958300.

4            Gan T, Schaberg KB, He D, Mansour A, Kapoor H, Wang C, Evers BM,  Bocklage TJ. Association Between Obesity and Histological Tumor Budding in Patients With Nonmetastatic Colon Cancer. JAMA Netw Open. 2021 Apr 1;4(4):e213897. doi: 10.1001/jamanetworkopen. 2021.3897. PMID: 33792733; PMCID: PMC8017472.

5            Neltner J, Bocklage T. Levering adult learning principles into a residency core curriculum. Cancer Cytopathol. 2021 Jul;129(7):501-505. doi: 10.1002/cncy.22418. Epub 2021 Mar 19. PMID: 33739608.

6            Haydar D, Gonzalez R, Garvy BA, Garneau-Tsodikova S, Thamban Chandrika N, Bocklage TJ, Feola DJ. Myeloid arginase-1 controls excessive inflammation and modulates T cell responses in Pseudomonas aeruginosa pneumonia. Immunobiology. 2020 Nov 24;226(1):152034. doi: 10.1016/j.imbio.2020.152034. Epub ahead of print. PMID: 33278710.

7            Syme N, Brettfeld S, Dorneden A, Samedi V, Bocklage T, Myers O, Herzon F, Meiklejohn DA. Occult Malignancy in Adult Tonsillectomy for Benign Indication. Ann Otol Rhinol Laryngol. 2020 Aug 25:3489420952474. doi: 10.1177/0003489420952474. Epub ahead of print. PMID: 32840127.

8            Biggs MJ, Huang B, Chen Q, Bocklage T, Schuh MR, Poi M, Villano JL, Cavnar MJ, Arnold SM, Miller RW, Ueland FR, Kolesar JM. Factors Predicting Participation in the Prospective Genomic Sequencing Study, Total Cancer Care (TCC), in Kentucky. J Rural Health. 2020 Jul 6. doi: 10.1111/ jrh.12492. Epub ahead of print. PMID: 32633045.

9            Carothers LJ, Agarwal R, Guan P, Odeh H, Sachs MC, Engel KB, Greytak SR, Barcus M, Soria C, Lih CJ, Williams PM, Branton PA, Sobin L, Fombonne B, Bocklage T, Andry C, Duffy ER, Sica G, Dhir R, Jewell S, Roche N, Moore HM; National Cancer Institute pecimen Preanalytical Variables Research Program. The Biospecimen Preanalytical Variables Program: A Multiassay Comparison of Effects of Delay to Fixation and Fixation Duration on Nucleic Acid Quality. Arch Pathol Lab Med. 2019 Sep;143(9):1106-1118. doi: 10.5858/ arpa.2018-0172-OA. Epub 2019 Feb 20. PMID: 30785788.

10       Tandberg SR, Bocklage T, Bartlett MR, Morrison LA, Nelson J, Hart BL.Vertebral Intraosseous Vascular Malformations in a Familial Cerebral Cavernous Malformation Population: Prevalence, Histologic Features, and Associations With CNS Disease. AJR Am J Roentgenol. 2020 Feb;214(2):428-436. doi: 10.2214/AJR.19.21492. Epub 2019 Dec 11. PMID: 31825263.

11       Sanchez A, Bocklage T. Precision Cytopathology: Expanding Opportunities for Biomarker Testing in Cytopathology. J Amer Soc Cytopathol 2019; 8(2):95-115.

12       Greenbaum A, Martin DR, Bocklage T, Lee JH, Ness SA, Rajput A. Tumor Heterogeneity as a Predictor of Response to Neoadjuvant Chemotherapy in Locally Advanced Rectal Cancer. Clin Colorectal Cancer 2019 Feb 13. pii: S1533-0028(18)30597-8. doi: 10.1016/j.clcc.2019.02.003. [Epub ahead of print] PubMed PMID: 30935775.

13       Carithers LJ, Agarwal R, Guan P, Odeh H, Sachs MC, Engel KB, Greytak SR, Barcus M, Soria C, Lih CJ, Williams PM, Branton PA, Sobin L, Fombonne B, Bocklage T, Andry C, Duffy ER, Sica G, Dhir R, Jewell S, Roche N, Moore HM; National Cancer Institute Biospecimen Preanalytical Variables Research Program. The Biospecimen Preanalytical Variables Program: A Multiassay Comparison of Effects of Delay to Fixation and Fixation Duration on Nucleic Acid Quality. Arch Pathol Lab Med 2019 Feb 20. doi: 10.5858/arpa.2018-0172-OA. [Epub ahead of print] PubMed PMID: 30785788.

14       Wang Y, Xu X, Maglic D, Dill MT, Mojumdar K, Ng PK, Jeong KJ, Tsang YH, Moreno D, Bhavana VH, Peng X, Ge Z, Chen H, Li J, Chen Z, Zhang H, Han L, Du D, Creighton CJ, Mills GB; Cancer Genome Atlas Research Network, Camargo F, Liang H. Comprehensive Molecular Characterization of the Hippo Signaling Pathway in Cancer. Cell Rep 2018 Oct 30;25(5):1304-1317.e5. doi:10.1016/j.celrep.2018.10.001. PubMed PMID: 30380420; PubMed Central PMCID: PMC6326181.

15       Liu J, Murali T, Yu T, Liu C, Sivakumaran TA, Moseley HNB, Zhulin IB, Weiss HL, Durbin EB, Ellingson SR, Liu J, Huang B, Hallahan BJ, Horbinski CM, Hodges K, Napier DL, Bocklage T, Mueller J, Vanderford NL, Fardo DW, Wang C, Arnold SM. Characterization of Squamous Cell Lung Cancers from Appalachian Kentucky. Cancer Epidemiol Biomarkers Prev 2019 Feb;28(2):348-356. doi:10.1158/1055-9965.EPI-17-0984. Epub 2018 Oct 30. PubMed PMID: 30377206; PubMed Central PMCID: PMC6363884.

16       Korkut A, Zaidi S, Kanchi RS, Rao S, Gough NR, Schultz A, Li X, Lorenzi PL, Berger AC, Robertson G, Kwong LN, Datto M, Roszik J, Ling S, Ravikumar V, Manyam G, Rao A, Shelley S, Liu Y, Ju Z, Hansel D, de Velasco G, Pennathur A, Andersen JB, O'Rourke CJ, Ohshiro K, Jogunoori W, Nguyen BN, Li S, Osmanbeyoglu HU, Ajani JA, Mani SA, Houseman A, Wiznerowicz M, Chen J, Gu S, Ma W, Zhang J, Tong P, Cherniack AD, Deng C, Resar L; Cancer Genome Atlas Research Network, Weinstein JN, Mishra L, Akbani R. A Pan-Cancer Analysis Reveals High-Frequency Genetic Alterations in Mediators of Signaling by the TGF-β Superfamily. Cell Syst 2018 Oct 24;7(4):422-437.e7. doi: 10.1016/j.cels.2018.08.010. Epub 2018 Sep 26. PubMed PMID: 30268436; PubMed Central PMCID: PMC6370347.

17       Bailey MH, Tokheim C, Porta-Pardo E, Sengupta S, Bertrand D, Weerasinghe A, Colaprico A, Wendl MC, Kim J, Reardon B, Kwok-Shing Ng P, Jeong KJ, Cao S, Wang Z, Gao J, Gao Q, Wang F, Liu EM, Mularoni L, Rubio-Perez C, Nagarajan N, Cortés-Ciriano I, Zhou DC, Liang WW, Hess JM, Yellapantula VD, Tamborero D, Gonzalez-Perez A, Suphavilai C, Ko JY, Khurana E, Park PJ, Van Allen EM, Liang H; MC3 Working Group; Cancer Genome Atlas Research Network, Lawrence MS, Godzik A, Lopez-Bigas N, Stuart J, Wheeler D, Getz G, Chen K, Lazar AJ, Mills GB, Karchin R, Ding L. Comprehensive Characterization of Cancer Driver Genes and Mutations. Cell 2018 Aug 9;174(4):1034-1035. doi: 10.1016/j.cell.2018.07.034. PubMed PMID: 30096302.

18       Kahles A, Lehmann KV, Toussaint NC, Hüser M, Stark SG, Sachsenberg T, Stegle O, Kohlbacher O, Sander C; Cancer Genome Atlas Research Network, Rätsch G. Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients. Cancer Cell 2018 Aug 13;34(2):211-224.e6. doi: 10.1016/j.ccell. 2018.07.001. Epub 2018 Aug 2. PubMed PMID: 30078747.

19       Ricketts CJ, De Cubas AA, Fan H, Smith CC, Lang M, Reznik E, Bowlby R, Gibb EA, Akbani R, Beroukhim R, Bottaro DP, Choueiri TK, Gibbs RA, Godwin AK, Haake S, Hakimi AA, Henske EP, Hsieh JJ, Ho TH, Kanchi RS, Krishnan B, Kwiatkowski DJ, Lui W, Merino MJ, Mills GB, Myers J, Nickerson ML, Reuter VE, Schmidt LS, Shelley CS, Shen H, Shuch B, Signoretti S, Srinivasan R, Tamboli P, Thomas G, Vincent BG,Vocke CD, Wheeler DA, Yang L, Kim WY, Robertson AG; Cancer Genome Atlas Research Network, Spellman PT, Rathmell WK, Linehan WM. The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma. Cell Rep 2018 Jun 19;23(12):3698. doi: 10.1016/j.celrep.2018.06.032. PubMed PMID: 29925010.

20       Thorsson V, Gibbs DL, Brown SD, Wolf D, Bortone DS, Ou Yang TH, Porta-Pardo E, Gao GF, Plaisier CL, Eddy JA, Ziv E, Culhane AC, Paull EO, Sivakumar IKA, Gentles AJ, Malhotra R, Farshidfar F, Colaprico A, Parker JS, Mose LE, Vo NS, Liu J, Liu Y, Rader J, Dhankani V, Reynolds SM, Bowlby R, Califano A, Cherniack AD, Anastassiou D, Bedognetti D, Rao A, Chen K, Krasnitz A, Hu H, Malta TM, Noushmehr H, Pedamallu CS, Bullman S, Ojesina AI, Lamb A, Zhou W, Shen H, Choueiri TK,Weinstein JN, Guinney J, Saltz J, Holt RA, Rabkin CE; Cancer Genome Atlas Research Network, Lazar AJ, Serody JS, Demicco EG, Disis ML, Vincent BG, Shmulevich L. The Immune Landscape of Cancer. Immunity 2018 Apr 17;48(4):812-830.e14. doi: 10.1016/j.immuni.2018.03.023. Epub 2018 Apr 5. PubMed PMID: 29628290; PubMed Central PMCID: PMC5982584.

21       Liu J, Lichtenberg T, Hoadley KA, Poisson LM, Lazar AJ, Cherniack AD, Kovatich AJ, Benz CC, Levine DA, Lee AV, Omberg L, Wolf DM, Shriver CD, Thorsson V; Cancer Genome Atlas Research Network, Hu H. An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics. Cell 2018 Apr 5;173(2):400-416.e11. doi: 10.1016/j.cell.2018.02.052. PubMed PMID: 29625055; PubMed Central PMCID: PMC6066282.

22       Chen H, Li C, Peng X, Zhou Z, Weinstein JN; Cancer Genome Atlas Research Network, Liang H. A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples. Cell 2018 Apr 5;173(2):386-399.e12. doi: 10.1016/j.cell.2018.03.027. PubMed PMID: 29625054; PubMed Central PMCID: PMC5890960.

23       Bailey MH, Tokheim C, Porta-Pardo E, Sengupta S, Bertrand D, Weerasinghe A, Colaprico A, Wendl MC, Kim J, Reardon B, Ng PK, Jeong KJ, Cao S, Wang Z, Gao J, Gao Q, Wang F, Liu EM, Mularoni L, Rubio-Perez C, Nagarajan N, Cortés-Ciriano I, Zhou DC, Liang WW, Hess JM, Yellapantula VD, Tamborero D, Gonzalez-Perez A, Suphavilai C, Ko JY, Khurana E, Park PJ, Van Allen EM, Liang H; MC3 Working Group; Cancer Genome Atlas Research Network, Lawrence MS, Godzik A, Lopez-Bigas N, Stuart J, Wheeler D, Getz G, Chen K, Lazar AJ, Mills GB, Karchin R, Ding L. Comprehensive Characterization of Cancer Driver Genes and Mutations. Cell 2018 Apr 5;173(2):371-385.e18. doi: 10.1016/j.cell.2018.02.060. Erratum in: Cell. 2018 Aug 9;174(4):1034-1035. PubMed PMID: 29625053; PubMed Central PMCID: PMC6029450.

24       Huang KL, Mashl RJ, Wu Y, Ritter DI, Wang J, Oh C, Paczkowska M, Reynolds S, Wyczalkowski MA, Oak N, Scott AD, Krassowski M, Cherniack AD, Houlahan KE, Jayasinghe R, Wang LB, Zhou DC, Liu D, Cao S, Kim YW, Koire A, McMichael JF, Hucthagowder V, Kim TB, Hahn A, Wang C, McLellan MD, Al-Mulla F, Johnson KJ; Cancer Genome Atlas Research Network, Lichtarge O, Boutros PC, Raphael B, Lazar AJ, Zhang W, Wendl MC, Govindan R, Jain S, Wheeler D, Kulkarni S, Dipersio JF, Reimand J, Meric-Bernstam F, Chen K, Shmulevich I, Plon SE, Chen F, Ding L. Pathogenic Germline Variants in 10,389 Adult Cancers. Cell 2018 Apr 5;173(2):355-370.e14. doi: 10.1016/j.cell.2018.03.039. PubMed PMID: 29625052; PubMed Central PMCID: PMC5949147.

25       Malta TM, Sokolov A, Gentles AJ, Burzykowski T, Poisson L, Weinstein JN, Kamińska B, Huelsken J, Omberg L, Gevaert O, Colaprico A, Czerwińska P, Mazurek S, Mishra L, Heyn H, Krasnitz A, Godwin AK, Lazar AJ; Cancer Genome Atlas Research Network, Stuart JM, Hoadley KA, Laird PW, Noushmehr H, Wiznerowicz M. Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation. Cell 2018 Apr 5;173(2):338-354.e15. doi:10.1016/j.cell.2018.03.034. PubMed PMID: 29625051; PubMed Central PMCID: PMC5902191.

26       Sanchez-Vega F, Mina M, Armenia J, Chatila WK, Luna A, La KC, Dimitriadoy S, Liu DL, Kantheti HS, Saghafinia S, Chakravarty D, Daian F, Gao Q, Bailey MH, Liang WW, Foltz SM, Shmulevich I, Ding L, Heins Z, Ochoa A, Gross B, Gao J, Zhang H, Kundra R, Kandoth C, Bahceci I, Dervishi L, Dogrusoz U, Zhou W, Shen H, Laird PW, Way GP, Greene CS, Liang H, Xiao Y, Wang C, Iavarone A, Berger AH, Bivona TG, Lazar AJ, Hammer GD, Giordano T, Kwong LN, McArthur G, Huang C, Tward AD, Frederick MJ, McCormick F, Meyerson M; Cancer Genome Atlas Research Network, Van Allen EM, Cherniack AD, Ciriello G, Sander C, Schultz N. Oncogenic Signaling Pathways in The Cancer Genome Atlas. Cell 2018 Apr 5;173(2): 321-337.e10. doi: 10.1016/j.cell.2018.03.035. PubMed PMID: 29625050; PubMed Central PMCID: PMC6070353.

27       Ding L, Bailey MH, Porta-Pardo E, Thorsson V, Colaprico A, Bertrand D, Gibbs, DL, Weerasinghe A, Huang KL, Tokheim C, Cortés-Ciriano I, Jayasinghe R, Chen F, Yu L, Sun S, Olsen C, Kim J, Taylor AM, Cherniack AD, Akbani R, Suphavilai C, Nagarajan N, Stuart JM, Mills GB, Wyczalkowski MA, Vincent BG, Hutter CM, Zenklusen JC, Hoadley KA, Wendl MC, Shmulevich L, Lazar AJ, Wheeler DA, Getz G; Cancer Genome Atlas Research Network. Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics. Cell 2018 Apr 5;173(2): 305-320.e10. doi: 10.1016/j.cell.2018.03.033. PubMed PMID: 29625049; PubMed Central PMCID: PMC5916814.

28       Hoadley KA, Yau C, Hinoue T, Wolf DM, Lazar AJ, Drill E, Shen R, Taylor AM, Cherniack AD, Thorsson V, Akbani R, Bowlby R, Wong CK, Wiznerowicz M, Sanchez-Vega F, Robertson AG, Schneider BG, Lawrence MS, Noushmehr H, Malta TM; Cancer Genome Atlas Network, Stuart JM, Benz CC, Laird PW. Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer. Cell 2018 Apr 5;173(2):291-304.e6. doi: 10.1016/j.cell. 2018.03.022. PubMed PMID: 29625048; PubMed Central PMCID: PMC5957518.

29       Liu Y, Sethi NS, Hinoue T, Schneider BG, Cherniack AD, Sanchez-Vega F, Seoane JA, Farshidfar F, Bowlby R, Islam M, Kim J, Chatila W, Akbani R, Kanchi RS, Rabkin CS, Willis JE, Wang KK, McCall SJ, Mishra L, Ojesina AI, Bullman S, Pedamallu CS, Lazar AJ, Sakai R; Cancer Genome Atlas Research Network, Thorsson V, Bass AJ, Laird PW. Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas. Cancer Cell 2018 Apr 9;33(4):721-735.e8. doi: 10.1016/j.ccell.2018.03.010. Epub 2018 Apr 2. PubMed PMID: 29622466; PubMed Central PMCID: PMC5966039.

30       Wang Z, Yang B, Zhang M, Guo W, Wu Z, Wang Y, Jia L, Li S; Cancer Genome Atlas Research Network, Xie W, Yang D. lncRNA Epigenetic Landscape Analysis Identifies EPIC1 as an Oncogenic lncRNA that Interacts with MYC and Promotes Cell-Cycle Progression in Cancer. Cancer Cell 2018 Apr 9;33(4): 706-720.e9. doi: 10.1016/j.ccell.2018.03.006. Epub 2018 Apr 2. PubMed PMID: 29622465; PubMed Central PMCID: PMC6143179.

31       Berger AC, Korkut A, Kanchi RS, Hegde AM, Lenoir W, Liu W, Liu Y, Fan H, Shen H, Ravikumar V, Rao A, Schultz A, Li X, Sumazin P, Williams C, Mestdagh P, Gunaratne PH, Yau C, Bowlby R, Robertson AG, Tiezzi DG, Wang C, Cherniack AD, Godwin AK, Kuderer NM, Rader JS, Zuna RE, Sood AK, Lazar AJ, Ojesina AI, Adebamowo C, Adebamowo SN, Baggerly KA, Chen TW, Chiu HS, Lefever S, Liu L, MacKenzie K, Orsulic S, Roszik J, Shelley CS, Song Q, Vellano CP, Wentzensen N; Cancer Genome Atlas Research Network, Weinstein JN, Mills GB, Levine DA, Akbani R. A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers. Cancer Cell 2018 Apr 9;33(4):690-705.e9. doi: 10.1016/j.ccell. 2018.03.014. Epub 2018 Apr 2. PubMed PMID: 29622464; PubMed Central PMCID: PMC5959730.

32       Taylor AM, Shih J, Ha G, Gao GF, Zhang X, Berger AC, Schumacher SE, Wang C, Hu H, Liu J, Lazar AJ; Cancer Genome Atlas Research Network, Cherniack AD, Beroukhim R, Meyerson M. Genomic and Functional Approaches to Understanding Cancer Aneuploidy. Cancer Cell 2018 Apr 9;33(4):676-689.e3. doi: 10.1016/j.ccell.2018.03.007. Epub 2018 Apr 2. PubMed PMID: 29622463; PubMed Central PMCID: PMC6028190.

33       Ricketts CJ, De Cubas AA, Fan H, Smith CC, Lang M, Reznik E, Bowlby R, Gibb EA, Akbani R, Beroukhim R, Bottaro DP, Choueiri TK, Gibbs RA, Godwin AK, Haake S, Hakimi AA, Henske EP, Hsieh JJ, Ho TH, Kanchi RS, Krishnan B, Kwiatkowski DJ, Lui W, Merino MJ, Mills GB, Myers J, Nickerson ML, Reuter VE, Schmidt LS, Shelley CS, Shen H, Shuch B, Signoretti S, Srinivasan R, Tamboli P, Thomas G, Vincent BG, Vocke CD, Wheeler DA, Yang L, Kim WY, Robertson AG; Cancer Genome Atlas Research Network, Spellman PT, Rathmell WK, Linehan WM. The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma. Cell Rep 2018 Apr 3;23(1):313-326.e5. doi: 10.1016/j.celrep.2018.03.075. Erratum in: Cell Rep. 2018 Jun 19;23(12):3698. PubMed PMID: 29617669; PubMed Central PMCID: PMC6075733.

34       Chiu HS, Somvanshi S, Patel E, Chen TW, Singh VP, Zorman B, Patil SL, Pan Y, Chatterjee SS; Cancer Genome Atlas Research Network, Sood AK, Gunaratne PH, Sumazin P. Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context. Cell Rep 2018 Apr 3;23(1): 297-312.e12. doi:10.1016/j.celrep.2018.03.064. PubMed PMID: 29617668; PubMed Central PMCID: PMC5906131.

35       Jayasinghe RG, Cao S, Gao Q, Wendl MC, Vo NS, Reynolds SM, Zhao Y, Climente-González H, Chai S, Wang F, Varghese R, Huang M, Liang WW, Wyczalkowski MA, Sengupta S, Li Z, Payne SH, Fenyö D, Miner JH, Walter MJ; Cancer Genome Atlas Research Network, Vincent B, Eyras E, Chen K, Shmulevich I, Chen F, Ding L.Systematic Analysis of Splice-Site-Creating Mutations in Cancer. Cell Rep 2018 Apr 3;23(1):270-281.e3. doi: 10.1016/j.celrep.2018.03.052. PubMed PMID: 29617666; PubMed Central PMCID: PMC6055527.

36       Peng X, Chen Z, Farshidfar F, Xu X, Lorenzi PL, Wang Y, Cheng F, Tan L, Mojumdar K, Du D, Ge Z, Li J, Thomas GV, Birsoy K, Liu L, Zhang H, Zhao Z, Marchand C, Weinstein JN; Cancer Genome Atlas Research Network, Bathe OF, Liang H. Molecular Characterization and Clinical Relevance of Metabolic Expression Subtypes in Human Cancers. Cell Rep 2018 Apr 3;23(1):255-269.e4. doi: 10.1016/j.celrep.2018.03.077. PubMed PMID: 29617665; PubMed Central PMCID: PMC5916795.

37       Knijnenburg TA, Wang L, Zimmermann MT, Chambwe N, Gao GF, Cherniack AD, Fan H, Shen H, Way GP, Greene CS, Liu Y, Akbani R, Feng B, Donehower LA, Miller C, Shen Y, Karimi M, Chen H, Kim P, Jia P, Shinbrot E, Zhang S, Liu J, Hu H, Bailey MH, Yau C, Wolf D, Zhao Z, Weinstein JN, Li L, Ding L, Mills GB, Laird PW, Wheeler DA, Shmulevich I; Cancer Genome Atlas Research Network, Monnat RJ Jr, Xiao Y, Wang C. Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas. Cell Rep 2018 Apr 3;23(1):239-254.e6. doi: 10.1016/j.celrep.2018.03.076. PubMed PMID: 29617664; PubMed Central PMCID: PMC5961503.

38       Gao Q, Liang WW, Foltz SM, Mutharasu G, Jayasinghe RG, Cao S, Liao WW, Reynolds SM, Wyczalkowski MA, Yao L, Yu L, Sun SQ; Fusion Analysis Working Group; Cancer Genome Atlas Research Network, Chen K, Lazar AJ, Fields RC, Wendl MC, Van Tine BA, Vij R, Chen F, Nykter M, Shmulevich I, Ding L. Driver Fusions and Their Implications in the Development and Treatment of Human Cancers. Cell Rep 2018 Apr 3;23(1):227-238.e3. doi: 10.1016/j.celrep.2018.03.050. PubMed PMID: 29617662; PubMed Central PMCID: PMC5916809.

39       Ge Z, Leighton JS, Wang Y, Peng X, Chen Z, Chen H, Sun Y, Yao F, Li J, Zhang  H, Liu J, Shriver CD, Hu H; Cancer Genome Atlas Research Network, Piwnica-Worms H, Ma L, Liang H. Integrated Genomic Analysis of the Ubiquitin Pathway across Cancer Types. Cell Rep 2018 Apr 3;23(1):213-226.e3. doi: 10.1016/j.celrep.2018.03.047. PubMed PMID: 29617661; PubMed Central PMCID: PMC5916807.

40       Campbell JD, Yau C, Bowlby R, Liu Y, Brennan K, Fan H, Taylor AM, Wang C,Walter V, Akbani R, Byers LA, Creighton CJ, Coarfa C, Shih J, Cherniack AD, Gevaert O, Prunello M, Shen H, Anur P, Chen J, Cheng H, Hayes DN, Bullman S, Pedamallu CS, Ojesina AI, Sadeghi S, Mungall KL, Robertson AG, Benz C, Schultz A, Kanchi RS, Gay CM, Hegde A, Diao L, Wang J, Ma W, Sumazin P, Chiu HS, Chen TW, Gunaratne P, Donehower L, Rader JS, Zuna R, Al-Ahmadie H, Lazar AJ, Flores ER, Tsai KY, Zhou JH, Rustgi AK, Drill E, Shen R, Wong CK; Cancer Genome Atlas Research Network, Stuart JM, Laird PW, Hoadley KA, Weinstein JN, Peto M, Pickering CR, Chen Z, Van Waes C. Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas. Cell Rep 2018 Apr 3;23(1):194-212.e6. doi: 10.1016/j.celrep.2018.03.063. PubMed PMID: 29617660; PubMed Central PMCID: PMC6002769.

41       Saltz J, Gupta R, Hou L, Kurc T, Singh P, Nguyen V, Samaras D, Shroyer KR, Zhao T, Batiste R, Van Arnam J; Cancer Genome Atlas Research Network, Shmulevich  I, Rao AUK, Lazar AJ, Sharma A, Thorsson V. Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images. Cell Rep 2018 Apr 3;23(1):181-193.e7. doi: 10.1016/j.celrep. 2018.03.086. PubMed PMID: 29617659; PubMed Central PMCID: PMC5943714.

42       Way GP, Sanchez-Vega F, La K, Armenia J, Chatila WK, Luna A, Sander C, Cherniack AD, Mina M, Ciriello G, Schultz N; Cancer Genome Atlas Research Network, Sanchez Y, Greene CS. Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas. Cell Rep 2018 Apr 3;23(1): 172-180.e3. doi: 10.1016/j.celrep.2018.03.046. PubMed PMID: 29617658; PubMed Central PMCID: PMC5918694.

43       Schaub FX, Dhankani V, Berger AC, Trivedi M, Richardson AB, Shaw R, Zhao W, Zhang X, Ventura A, Liu Y, Ayer DE, Hurlin PJ, Cherniack AD, Eisenman RN, BernardB, Grandori C; Cancer Genome Atlas Network. Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas. Cell Syst 2018 Mar 28;6(3):282-300.e2. doi: 10.1016/j.cels.2018.03.003. PubMed PMID: 29596783; PubMed Central PMCID: PMC5892207.

44       Schaub FX, Dhankani V, Berger AC, Trivedi M, Richardson AB, Shaw R, Zhao W, Zhang X, Ventura A, Liu Y, Ayer DE, Hurlin PJ, Cherniack AD, Eisenman RN, BernardB, Grandori C; Cancer Genome Atlas Network. Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas. Cell Syst 2018 Mar 28;6(3):282-300.e2. doi: 10.1016/j.cels.2018.03.003. PubMed PMID: 29596783; PubMed Central PMCID: PMC5892207.

45       Ellrott K, Bailey MH, Saksena G, Covington KR, Kandoth C, Stewart C, Hess J, Ma S, Chiotti KE, McLellan M, Sofia HJ, Hutter C, Getz G, Wheeler D, Ding L; MC3 Working Group; Cancer Genome Atlas Research Network. Scalable Open Science Approach for Mutation Calling of Tumor Exomes Using Multiple Genomic Pipelines. Cell Syst 2018 Mar 28;6(3):271-281.e7. doi: 10.1016/j.cels. 2018.03.002. PubMed PMID: 29596782; PubMed Central PMCID: PMC6075717.

46       Huho AN, Yadak N, Bocklage TJ, Yang S. Evaluation of Diagnostic Utility of a High-Risk Human Papillomavirus PCR Test on Formalin-Fixed, Paraffin-Embedded Head and Neck Tumor Tissues. J Mol Diagn 2018 Mar;20(2):232-239. doi: 10.1016/j.jmoldx.2017.11.008. Epub 2017 Dec 20. PubMed PMID: 29277636.

47       Rajput A, Bocklage T, Greenbaum A, Lee JH, Ness SA. Mutant-Allele Tumor Heterogeneity Scores Correlate With Risk of Metastases in Colon Cancer. Clin Colorectal Cancer 2017 Sep;16(3):e165-e170. doi: 10.1016/j.clcc.2016.11.004. Epub 2016 Nov 23. PMID: 28073683.

48       Neuwelt A, Langsjoen J, Byrd T, Eberhardt S, Mlady G, Baca J, Bocklage T, Martinez C, Orner J, Rivera M, Sillerud LO.   Ferumoxytol Negatively Enhances T(2) – Weighted MRI Of Pedal Osteomyelitis In Vivo.  J Magn Reson Imaging 2017 Apr;45(4):1241-1245.

49       Cancer Genome Atlas Research Network.  Integrated Genomic And Molecular Characterization Of Cervical Cancer.   Nature 2017, Mar 16;543(7645):378-384.

50       Rupp AP, Bocklage TJ. Mammary Analog Secretory Carcinoma Of Thyroid: A Case Report.  Diagn Cytopathol 2017 Jan; 45(1):45-50.

51       Rajput A, Bocklage T, Greenbaum A, Lee JH, Ness SA.  Mutant-Allele Tumor Heterogeneity Scores Correlate With Risk Of Metastases In Colon Cancer.   Clin Colorectal Cancer 2016 Nov 23. [Epub ahead of print]

52       Reynolds S, Shaheen M, Olson G, Barry M, Wu J, Bocklage T. A Case Of Primary Mammary Analog Secretory Carcinoma (MASC) Of The Thyroid Masquerading As Papillary Thyroid Carcinoma: Potentially More Than A One Off. Head Neck Pathol 2016 Sept;10(3):405-13.

53       Broehm CJ, Garbrecht EL, Wood J, Bocklage T. Two Cases Of Sarcoma Arising In Giant Cell Tumor Of Bone Treated With Denosumab. Case Reports in Medicine 2015: Article ID 767198; 6 pages.

54       Armijo B, Bocklage T, Heideman R.  Intratubular Large Cell Hyalinizing Sertoli Cell Tumor Of The Testes In A 4-Year-Old Male With Peutz-Jeghers Syndrome. J Pediatr Hematol Oncol 2015 37(3):e184-87.

55       Broehm CJ, Wu J, Gullapalli RR, Bocklage T.  Extraskeletal Myxoid Chondrosarcoma With A T(9;16)(Q22;P11.2) Resulting In A NR4A3-FUS Fusion. Cancer Genet 2014 Jun;207(6):276-80.

56       Broehm CJ, M’lady G, Bocklage T, Wenceslao S, Chafey D. Bizarre Parosteal Osteochondromatous Proliferation: A New Cytogenetic Subgroup Characterized By Inversion Of Chromosome 7. Cancer Genet 2013 Nov;206(11):402-5.  PMID: 24412018.

57       Verschraegen CF, Movva S, Ji Y, Schmit B, Quinn RH, Liem B, Bocklage T, Shaheen M.  A Phase I Study Of The Combination Of Termsirolimus With Irinotecan For Metastatic Sarcoma.   Cancers (Basel) 2013 Apr 11;5(2);418-29.

58       Verschraegen CF, Arias-Pulido H, Lee SJ, Movva S, Cerilli LA, Eberhardt S, Schmit B, Quinn R, Muller CY, Rabinowitz I, Purdy M, Snyder D, Bocklage TJ. Phase 1B Study Of The Combination Of Docetaxel, Gemciabine, And Bevacizumab In Patients With Advanced Or Recurrent Soft Tissue Sarcoma: The Axtell Regimen. Ann Oncol 2012; 23(3):785-790.

59       Zuriarrain A, Nir I, Bocklage TJ, Rajput A. Pseudopapillary Tumor Of The Pancreas In A 17-Year-Old Girl. J Clin Oncol 2011; 29(14):e395-6. Epub 2011 Feb 22.

60       Sayar H, Bunning JT, Bocklage TJ, Lee SJ, Libby E, Rabinowitz I.   Tumor MET Expression May Not Predict The Risk Of Venous Thromboembolism In Cancer Patients. Oncology Res 2010;19(2):93-7.

61       Krier K, Henderson JB, Bocklage T, Rajput A. Duodenal Pseudomelanosis. Surgery 2012; Jan; 151(1):129-30.

62       Smith M, Hagerty KA, Skipper B, Bocklage T.  Chronic Endometritis: Combined Histopathologic And Clinical Review Of Cases From 2002-2007. Int J Gynecol Pathol 2010;29(1): 44-50. Review.

63       Arias-Pulido H, Smith HO, Joste NE, Bocklage T, Qualls CR, Chavez A, Prossnitz ER, Verschraegen CF.  Estrogen And Progesterone Receptor Status And Outcome In Epithelial Ovarian Cancers And Low Malignant Potential Tumors. Gynecologic Oncology 2009;114(3):480-5.

64       Mourant JR, Bocklage TJ, Powers TM, Greene HM, Dorin MH, Waxman AG, Zsemlye MM, Smith HO.   Detection Of Cervical Intraepithelial Neoplasias And Cancers In Cervical Tissue By In Vivo Light Scattering.  J Low Genit Tract Dis 2009;13(4):216-223.

65       Mourant JR, Powers TM, Bocklage TJ, Greene HM, Dorin MH, Waxman AG, Zsemlye MM, Smith HO. In Vivo Light Scattering For The Detection Of Cancerous And Precancerous Lesions Of The Cervix.  App Opt 2009;48(10):D26-35.

66       Davis LM, Harris C, Tang L, Doherty P, Hraber P, Sakai Y, Bocklage T, Doeden K, Hall B, Alsobrook J, Rabinowitz I, Williams TM, Hozier J. Amplification Patterns Of Three Genomic Regions Predict Distant Recurrence In Breast Carcinoma.  J Molecular Diagnostics 2007;9(3):327-36.

67       Belinsky SA, Grimes MJ, Casas E, Stidley CA, Franklin WA, Bocklage TJ, Johnson DH, Schiller JH.   Predicting Gene Promoter Methylation In Non-Small-Cell Lung Cancer By Evaluating Sputum And Serum. British J Cancer 2007;96(8):1278-83.

68       Mourant JR, Bocklage TJ, Powers TM, Greene HM, Bullock KL, Marr-Lyon LR, Dorin MH, Waxman AG, Zsemlye MM, Smith HO.  In Vivo Light Scattering Measurements For Detection Of Precancerous Conditions Of The Cervix. Gynecologic Oncology 2007;105(2): 439-45.

69       Grimes JS, Bocklage TJ, Pitcher JD.   Collagen And Biphasic Calcium Phosphate Bone Graft In Large Osseous Defects. Orthopedics 2006;29(2):145-8.

70       Rosen SA, Bocklage T, Clericuzio CL.   Mucocutaneous Squamous Papilloma With Reactive Lymphoid Hyperplasia In Two Patients With Focal Dermal Hypoplasia. Pediatric Developmental Pathology 2005; 8(2):250-2.

71       Divine KK, Pulling LC, Marron-Terada PG, Liechty KC, Kang T, Schwartz AG, Bocklage TJ, Coons TA, Gilliland FD, Belinsky SA.  Multiplicity Of Abnormal Promoter Methylation In Lung Adenocarcinomas From Smokers And Never Smokers. International Journal Cancer 2005;114(3):400-5.

72       Petitt M, Doeden K, Harris A, Bocklage T. Cutaneous Extrarenal Rhabdoid Tumor With Myogenic Differentiation.  J Cutaneous Pathology 2005;32(10): 690-5.

73       Belinsky SA, Klinge DM, Dekker JD, Smith MW, Bocklage TJ, Gilliland FD, Crowell RE, Karp DD, Stidley CA, Picchi MA. Gene Promoter Methylation In Plasma And Sputum Increases With Lung Cancer Risk.  Clinical Cancer Research 2005;11(18): 6505-11.

74       Warren JL, Weaver DL, Bocklage T, Key CR, Platz CE, Cronin KA, Ballard C, Barbash R, Willey SC, Harlan LC.  The Frequency Of Ipsilateral Second Tumors After Breast-Conserving Surgery For DCIS: A Population Based Analysis. Cancer 2005;104(9):1840-8.

75       Rund CR, Bocklage T.  Pathologic Quiz Case: Lytic Femoral Lesion And Renal Cysts In A 66-Year-Old Man. Occult Follicular Carcinoma Of The Thyroid.  Arch Pathol Lab Med 2004;128(3):359-60.

76       Pulling LC, Divine KK, Klinge DM, Gilliland FD, Kang T, Schwartz AG, Bocklage TJ, Belinsky SA. Promoter Hypermethylation Of The O6-Methylguanine-DNA Methyltransferase Gene: More Common In Lung Adenocarcinomas From Never-Smokers Than Smokers And Associated With Tumor Progression. Cancer Research 2003;15:4842-8.

77       Fischer EG, Bocklage TJ, Rabinowitz I, Smith HO, Viswanatha DS.  Primary Plasmacytoma Arising In An Endocervical Polyp With Detection Of Neoplastic Cells On Papanicolaou Test. A Case Report And Review Of The Literature. Archives Pathology Lab Medicine 2003;127(1):e28-31.

78       Bocklage T, Leslie K, Yousem S, Colby T. Extracutaneous Angiosarcomas Metastatic To The Lungs: Clinical And Pathologic Features Of Twenty-One Cases. Mod Pathol 2001;14(12):1216-25.

79       Divine KK, Gilliland FD, Crowell RE, Stidley CA, Bocklage TJ, Cook DL, Belinsky SA.   The XRCC1 399 Glutamine Allele Is A Risk Factor For Adenocarcinoma Of The Lung. Mutation Research 2001;5(4):273-8.

80       Gaffney RL, Feddersen RM, Bocklage TJ, Joste NE. Fine Needle Aspiration Cytology Of Follicular Dendritic Cell Sarcoma. Report Of A Case with Cytologic Detection In An Extranodal Site. Acta Cytologica 2000;44(5):809-14.

81       Havlik DM, Farnath DA, Bocklage T.  Solitary Fibrous Tumor Of The Orbit With A T(9;22)(Q31;P13).  Arch Pathology Lab Medicine 2000;124(5):756-8.

82       Heese J, Bocklage T. Specimen Fine-Needle Aspiration Cytology Of Littoral Cell Angioma With Histologic And Immunohistochemical Confirmation. Diagnostic Cytopathology 2000;22(1):39-44.

83       Redlich G, Bocklage T, Joste N.  Fine Needle Aspiration Cytology Of Plexiform Fibrohistiocytic Tumor. A Case Report. Acta Cytologica 1999;43(5):867-72.

84       Schammel DP, Bocklage T.  Molar And Nonmolar Placentas. Am J Clinical Pathology 1999; 112(4):578.

85       Yousef O, Dichard A, Bocklage T. Aspiration Cytology Features Of The Warthin Tumor-Like Variant Of Papillary Thyroid Carcinoma. A Report Of Two Cases. Acta Cytologica 1997;41(4 Suppl):1361-8.

86       Bocklage TJ, Dail D, Colby TV. Primary Lung Tumors Infiltrated By Osteoclast-Like Giant Cells. Ann Diagnostic Pathology 1998;2(4):229-40.

87       Moore JG, Bocklage T.   Fine-Needle Aspiration Biopsy Of Large-Cell Undifferentiated Carcinoma Of The Salivary Glands: Presentation Of Two Cases, Literature Review, And Differential Cytodiagnosis Of High-Grade Salivary Gland Malignancies. Diagnostic Cytopathology 1998;19(1):44-50.

88       McKinley E, Valles R, Bang R, Bocklage T.  Signet-Ring Squamous Cell Carcinoma: A Case Report. J Cutaneous Pathology 1998;25(3):176-81.

89       Mahle C, Schwartz M, Popek E, Bocklage T.   Intra-Abdominal Lymphangiomas In Children And Adults. Assessment Of Proliferative Activity.  Arch Pathology Lab Medicine 1997;121(10):1055-62.

90       Bocklage TJ, Ardeman T, Schaffner D.  Ameloblastic Fibroma: A Fine-Needle Aspiration Case Report.   Diagnostic Cytopathology 1997;17(4):280-6.

91       Bocklage T, DiTomasso JP, Ramzy I, Ostrowski ML.   Tall Cell Variant Of Papillary Thyroid Carcinoma: Cytologic Features And Differential Diagnostic Considerations. Diagnostic Cytopathology 1997;17(1):25-9.

92       Morimoto AK, Foral RD, Kuhlman JL, Zucker KA, Curet MJ, Bocklage T, MacFarlane TI, Kory L. Force Sensor For Laparoscopic Babcock. Studies Health Technology Informatics 1997;39:354-61.

93       Schammel DP, Bocklage T.  p53, PCNA, And Ki-67 In Hydropic Molar And Nonmolar Placentas: An Immunohistochemical Study. International J Gynecologic Pathology 1996;15(2):158-66.

94       Bocklage T, Feddersen R.  Unusual Mesenchymal And Mixed Tumors Of The Salivary Gland. An Immunohistochemical And Flow Cytometric Analysis Of Three Cases. Archives Pathology Lab Medicine 1995;119(1):69-74.

95       Bocklage TJ, Smith H, Bartow SA. Distinctive Flow Histogram Pattern In Molar Pregnancies With Elevated Maternal Serum Human Chorionic Gonadotropin Levels. Cancer 1994;73(11):2782-2790.

96       Bocklage TJ, Herzon FR.  Fine Needle Aspiration Of Schneiderian Papilloma--A Case Report.  Acta Cytologica 1994;38:772-777.

97       Bocklage TJ, Lee KR, Belinson JR.  Case Report-Uterine Müllerian Adenosarcoma Following Adenomyoma In A Woman On Tamoxifen Therapy. Gynecologic Oncology 1992;44:104-109.

Book and Book Chapters

1.          Von Samedi and Thèrése Bocklage. Pitfalls in Diagnostic Cytopathology with Key Differentiating Features. Essentials in Cytopathology Series. Springer: New York, 2017.

 2.          Mohammad A. Vasef and Aaron Auerbach with David R. Czuchlewski, Therese Bocklage, Devon Chabot Richards, Nadine Aguilera, Kristin Hunt Karner. Molecular Oncology Diagnostic Pathology. Elsevier: Philadelphia, PA, 2016 (20 chapters in first edition; 21 chapters in second edition published 2020).

 3.          Therese J Bocklage, Robert H Quinn, Berndt P Schmit, Claire F Verschraegen. Bone and Soft Tissue Tumors: A Multidisciplinary Review with Case Presentations. JP Press: London, 2014.

 4.          Harriet O. Smith, Steven C. Eberhardt, Claire F. Verschraegen, Therese J Bocklage. “Fallopian Tube Carcinoma” in Clinical Gynecology; Editors in Chief: Eric Bieber, Joseph Sanfilippo, and Ira Horowitz. Churchill Livingstone: Philadelphia, 2006, pages 687-698